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= GIMIAS Releases =
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= New features =
* [[GIMIAS_1_3_0_NewFeatures | GIMIAS 1.3.0]]
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* [[New end user features in GIMIAS 1 5 0]]
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* [[New end user features in GIMIAS 1 4 0]]
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* [[New end user features in GIMIAS 1 3 0]]
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* [[New end user features in GIMIAS 1 2 0]]
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* [[New end user features in GIMIAS 1 1 0]]
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= Plugins =
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Here you can find a list of all documented plugins in the wiki [[:Category:Plugins]]. For a complete list of all available plugins you can also access the [http://www.gimias.org/gimias-extensions GIMIAS web site].
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== Open source ==
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=== GIMIAS Plugins ===
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* Basic
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** [[DICOM Plugin]]
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** [[GenericSegmentationPlugin]]
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** [[Image Tools Plugin]]
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** [[Manual Segmentation Plugin]]
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** [[Mesh Editor Plugin]]
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** [[MITK Plugin]]
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** [[Signal Viewer Plugin]]
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* Extensions
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** [[CMGUI Plugin]]
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** [[Clinical Report Plugin]]
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** [[RemoteDataPlugin]]
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** [[Security Plugin]]
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** [[SSH Plugin]]
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** [[Taverna Plugin]]
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** [[WebServices Plugin]]
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** [[XNAT Plugin]]
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=== Command Line Plugins ===
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* Converters
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** [http://wiki.slicer.org/slicerWiki/index.php/Modules:CreateaDicomSeries-Documentation-3.6 Create a DICOM Series CLP]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:OrientImages-Documentation-3.6 Orient Images CLP]
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** [[Read DICOM CLP]]
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* Filtering
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** [[Append Body Parts CLP]]
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** Arithmetic
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:AddImages-Documentation-3.6 Add Images CLP]
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:CastImage-Documentation-3.6 Cast Image CLP]
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:MaskImage-Documentation-3.6 Mask Image CLP]
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:SubtractImages-Documentation-3.6 Subtract Images CLP]
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** CheckerBoard Filter
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** Denoising
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:CurvatureAnisotropicDiffusion-Documentation-3.6 Curvature Anisotropic Diffusion CLP]
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*** [[Gaussian Blur CLP]]
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:GradientAnisotropicFilter-Documentation-3.6 Gradient Anisotropic Diffusion CLP]
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:MedianFilter-Documentation-3.6 Median Filter CLP]
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** FSL
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*** [[Brain Extraction CLP]]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:HistogramMatching-Documentation-3.6 Histogram Matching CLP]
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** [http://wiki.slicer.org/slicerWiki/index.php/Modules:ImageLabelCombine-Documentation-3.6 Image Label Combine CLP]
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** [[Invert Intensity CLP]]
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** Morphology
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*** [[Dilate CLP]]
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*** [[Erode CLP]]
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:GreyscaleFillHole-Documentation-3.6 Grayscale Fill Hole CLP]
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*** [http://www.slicer.org/slicerWiki/index.php/Modules:GreyscaleGrindPeak-Documentation-3.6 Grayscale Grind Peak CLP]
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** [[Normalize by maximum CLP]]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:OtsuThreshold-Documentation-3.6 Otsu Threshold CLP]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:ResampleVolume-Documentation-3.6 Resample Scalar Volume CLP]
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** [http://wiki.slicer.org/slicerWiki/index.php/Modules:ResampleScalarVectorDWIVolume-Documentation-3.6 Resample Scalar/Vector/DWI Volume CLP]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:ThresholdImage-Documentation-3.6 Threshold Image CLP]
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** [[Tile Images CLP]]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:VotingBinaryHoleFilling-Documentation-3.6 Voting Binary Hole Filling CLP]
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** Zero Crossing Based Edge Detection Filter CLP
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* Quantification
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** [[Pixel Intensity CLP]]
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** [[Volumetric Mesh Scalar Value CLP]]
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* Registration
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** [[Affine Transform CLP]]
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** [[BSplines Transform CLP]]
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** [[Chain Transforms To VF CLP]]
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** [[Extend BSpline Transformation CLP]]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:AffineRegistration-Documentation-3.6 Fast Affine registration CLP]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:DeformableB-SplineRegistration-Documentation-3.4 Fast Nonrigid BSpline registration CLP]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:RigidRegistration-Documentation-3.6 Fast Rigid registration CLP]
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** Linear registration CLP
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* Segmentation
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** [[Binary Threshold Segmentation CLP]]
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** [[Connected Threshold CLP]]
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** [[Isolated Connected CLP]]
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** [[Marching cubes CLP]]
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** [[Neighborhood Connected CLP]]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:OtsuThresholdSegmentation-Documentation-3.6 Otsu Threshold Segmentation CLP]
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** [http://www.slicer.org/slicerWiki/index.php/Modules:Simple_Region_Growing-Documentation-3.6 Simple region growing CLP]
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** [[Skull Stripper CLP]]
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* Surface Models
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** Label Map Smoothing CLP
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** [http://www.slicer.org/slicerWiki/index.php/Modules:MergeModels-Documentation-3.6 Merge Models CLP]
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** [http://wiki.slicer.org/slicerWiki/index.php/Modules:PolyDataToLabelmap-Documentation-3.6 PolyData To Label Map CLP]
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* Vector Field
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** [[VF Compose CLP]]
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** [[VF Crop CLP]]
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** [[VF DownSample CLP]]
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** [[VF Inverse CLP]]
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** [[VF Exp CLP]]
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** [[VF Log CLP]]
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** [[VF Mean CLP]]
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** [[Warp Image CLP]]
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** [[Warp Mesh CLP]]
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== Private ==
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=== GIMIAS clinical prototypes ===
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* [[AngioLab]]
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=== GIMIAS Plugins ===
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=== Command Line Plugins ===
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* Segmentation
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** [[Cardiac Initialization CLP]]
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** [[Cardiac Fitting CLP]]
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* Registration
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** [[Registration CLP]]
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** [[Deformation CLP]]
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* Quatification
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** [[Cardiac Quatification]]
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** [[Carotid Siphon Quantification]]
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** [[Geometry Descriptors]]
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* Devices
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**[[Stent Deployment]]
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* Simulation
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** Chaste
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*** [[Purkinje and Fibers CLP]]
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*** [[Chaste Parameters Writer CLP]]
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*** [[Cardio Chaste Reader CLP]]
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= Workflows =
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All workflows are publicly available in [http://www.myexperiment.org/workflows?filter=USER_ID%28%2223858%22%29&query=gimias myExperiment].
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* [http://www.myexperiment.org/workflows/2926.html Anatomical Atlas Generation]: Computes an anatomical atlas based on a set of patient images using registration methods

Latest revision as of 06:09, 21 January 2013

New features

Plugins

Here you can find a list of all documented plugins in the wiki Category:Plugins. For a complete list of all available plugins you can also access the GIMIAS web site.

Open source

GIMIAS Plugins

Command Line Plugins

Private

GIMIAS clinical prototypes

GIMIAS Plugins

Command Line Plugins

Workflows

All workflows are publicly available in myExperiment.