Brain Extraction CLP

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Brain Extraction

General Information

  • Type: CLP
  • Category: Filtering->FSL
  • Author: Xavi Planes
  • Contributor: Xavi Planes
  • Contact: xavier.planes@upf.edu
  • Description: Based on BET (Brain Extraction Tool) application. Deletes non-brain tissue from an image of the whole head. It can also estimate the inner and outer skull surfaces, and outer scalp surface, if you have good quality T1 and T2 input images.

BET application must be installed in the local computer and the application "bet" must be configured in the system path.

Usage

Parameters

Label Type Flag / Index Default value / Channel Description
Parameters
Sleep double --sleep 10 In seconds
IO
Input Volume image fileExtensions = ".nii.gz" index 0 input Input Volume
Output Volume image fileExtensions = ".nii.gz" index 1 output Output Volume

Examples

Sample Data:DICOM example files of the brain

Brain Extraction

Development

Source code: C++ Source code and XML description

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