Brain Extraction CLP

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Brain Extraction

General Information

  • Type: CLP
  • Category: Filtering->FSL
  • Author: Xavi Planes
  • Contributor: Xavi Planes
  • Contact:
  • Description: Based on BET (Brain Extraction Tool) application. Deletes non-brain tissue from an image of the whole head. It can also estimate the inner and outer skull surfaces, and outer scalp surface, if you have good quality T1 and T2 input images.

BET application must be installed in the local computer and the application "bet" must be configured in the system path.



Label Type Flag / Index Default value / Channel Description
Sleep double --sleep 10 In seconds
Input Volume image fileExtensions = ".nii.gz" index 0 input Input Volume
Output Volume image fileExtensions = ".nii.gz" index 1 output Output Volume


Sample Data:DICOM example files of the brain

Brain Extraction


Source code: C++ Source code and XML description

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